{"id":4494,"date":"2023-07-10T16:35:21","date_gmt":"2023-07-10T16:35:21","guid":{"rendered":"https:\/\/statorials.org\/cn\/%e7%83%ad%e5%9b%ber\/"},"modified":"2023-07-10T16:35:21","modified_gmt":"2023-07-10T16:35:21","slug":"%e7%83%ad%e5%9b%ber","status":"publish","type":"post","link":"https:\/\/statorials.org\/cn\/%e7%83%ad%e5%9b%ber\/","title":{"rendered":"\u5982\u4f55\u5728 r \u4e2d\u4f7f\u7528 pheatmap() \u521b\u5efa\u70ed\u56fe"},"content":{"rendered":"<p><\/p>\n<hr>\n<p><span style=\"color: #000000;\">\u60a8\u53ef\u4ee5\u4f7f\u7528 R \u4e2d<strong>pheatmap<\/strong>\u5305\u7684<strong>pheatmap()<\/strong>\u51fd\u6570\u6765\u521b\u5efa\u9ad8\u5ea6\u81ea\u5b9a\u4e49\u7684\u70ed\u56fe\u3002<\/span><\/p>\n<p><span style=\"color: #000000;\">\u4ee5\u4e0b\u793a\u4f8b\u5c55\u793a\u4e86\u5982\u4f55\u5728\u5b9e\u8df5\u4e2d\u901a\u8fc7\u4ee5\u4e0b\u5047\u6570\u636e\u96c6\u4f7f\u7528\u6b64\u51fd\u6570\uff1a<\/span><\/p>\n<pre style=\"background-color: #ececec; font-size: 15px;\"> <strong><span style=\"color: #008080;\">#make this example reproducible\n<\/span>set. <span style=\"color: #3366ff;\">seeds<\/span> (1)\n\n<span style=\"color: #008080;\">#create matrix with fake data values\n<\/span>data = matrix(rnorm(100), 20, 5)\ndata[1:10, seq(1, 5, 1)] = data[1:10, seq(1, 5, 1)] + 3\ndata [11:20, seq(2, 5, 1)] = data [11:20, seq(2, 5, 1)] + 2\ndata [15:20, seq(2, 5, 1)] = data [15:20, seq(2, 5, 1)] + 4\n\n<span style=\"color: #008080;\">#add column names and row names\n<\/span>colnames(data) = paste(\" <span style=\"color: #ff0000;\">T<\/span> \", 1:5, sep = \"\")\nrownames(data) = paste(\" <span style=\"color: #ff0000;\">Gene<\/span> \", 1:20, sep=\"\")\n\n<span style=\"color: #008080;\">#view matrx\n<\/span>data\n\n                T1 T2 T3 T4 T5\nGene1 2.37354619 3.918977 2.8354764 5.401618 2.431331\nGene2 3.18364332 3.782136 2.7466383 2.960760 2.864821\nGene3 2.16437139 3.074565 3.6969634 3.689739 4.178087\nGene4 4.59528080 1.010648 3.5566632 3.028002 1.476433\nGene5 3.32950777 3.619826 2.3112443 2.256727 3.593946\nGene6 2.17953162 2.943871 2.2925048 3.188792 3.332950\nGene7 3.48742905 2.844204 3.3645820 1.195041 4.063100\nGene8 3.73832471 1.529248 3.7685329 4.465555 2.695816\nGene9 3.57578135 2.521850 2.8876538 3.153253 3.370019\nGene10 2.69461161 3.417942 3.8811077 5.172612 3.267099\nGene11 1.51178117 3.358680 2.3981059 2.475510 1.457480\nGene12 0.38984324 1.897212 1.3879736 1.290054 3.207868\nGene13 -0.62124058 2.387672 2.3411197 2.610726 3.160403\nGene14 -2.21469989 1.946195 0.8706369 1.065902 2.700214\nGene15 1.12493092 4.622940 7.4330237 4.746367 7.586833\nGene16 -0.04493361 5.585005 7.9803999 6.291446 6.558486\nGene17 -0.01619026 5.605710 5.6327785 5.556708 4.723408\nGene18 0.94383621 5.940687 4.9558654 6.001105 5.426735\nGene19 0.82122120 7.100025 6.5697196 6.074341 4.775387\nGene20 0.59390132 6.763176 5.8649454 5.410479 5.526599<\/strong><\/pre>\n<h2><span style=\"color: #000000;\"><strong>\u793a\u4f8b 1\uff1a\u521b\u5efa\u57fa\u672c\u70ed\u56fe<\/strong><\/span><\/h2>\n<p><span style=\"color: #000000;\">\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528<strong>\u70ed\u56fe<\/strong>\u4e2d\u7684\u9ed8\u8ba4\u8bbe\u7f6e\u521b\u5efa\u70ed\u56fe\u6765\u53ef\u89c6\u5316\u6240\u6709\u77e9\u9635\u503c\uff1a<\/span> <\/p>\n<pre style=\"background-color: #ececec; font-size: 15px;\"> <strong><span style=\"color: #008080;\"><span style=\"color: #000000;\"><span style=\"color: #008000;\">library<\/span> (heatmap)\n\n<span style=\"color: #008080;\">#create basic heatmap<\/span>\npheatmap(data)<\/span><\/span><\/strong> <\/pre>\n<p><img decoding=\"async\" loading=\"lazy\" class=\"aligncenter wp-image-35122\" src=\"https:\/\/statorials.org\/wp-content\/uploads\/2023\/08\/phheat1.png\" alt=\"R \u4e2d\u7684 pheatmap \u793a\u4f8b\" width=\"502\" height=\"503\" srcset=\"\" sizes=\"auto, \"><\/p>\n<h2><span style=\"color: #000000;\"><strong>\u793a\u4f8b 2\uff1a\u521b\u5efa\u5e26\u6709\u5355\u5143\u683c\u6807\u7b7e\u7684\u70ed\u56fe<\/strong><\/span><\/h2>\n<p><span style=\"color: #000000;\">\u6211\u4eec\u53ef\u4ee5\u4f7f\u7528<strong>display_numbers<\/strong>\u548c<strong>fontsize_number<\/strong>\u53c2\u6570\u521b\u5efa\u4ee5\u7279\u5b9a\u5b57\u4f53\u5927\u5c0f\u663e\u793a\u70ed\u56fe\u6bcf\u4e2a\u5355\u5143\u683c\u4e2d\u7684\u6570\u503c\uff1a<\/span> <\/p>\n<pre style=\"background-color: #ececec; font-size: 15px;\"> <strong><span style=\"color: #008080;\"><span style=\"color: #000000;\"><span style=\"color: #008000;\">library<\/span> (heatmap)\n\n<span style=\"color: #008080;\">#create heatmap with numerical labels in cells<\/span>\npheatmap(data, display_numbers= <span style=\"color: #008000;\">TRUE<\/span> , fontsize_number= <span style=\"color: #008000;\">12<\/span> )\n<\/span><\/span><\/strong><\/pre>\n<p><img decoding=\"async\" loading=\"lazy\" class=\" wp-image-35123 aligncenter\" src=\"https:\/\/statorials.org\/wp-content\/uploads\/2023\/08\/phheat2.png\" alt=\"\" width=\"492\" height=\"481\" srcset=\"\" sizes=\"auto, \"><\/p>\n<p><span style=\"color: #000000;\"><strong>\u6ce8\u610f<\/strong>\uff1a <strong>fontsize_number<\/strong>\u7684\u9ed8\u8ba4\u503c\u4e3a<strong>8<\/strong> \u3002<\/span><\/p>\n<h2><span style=\"color: #000000;\"><strong>\u793a\u4f8b 3\uff1a\u4f7f\u7528\u81ea\u5b9a\u4e49\u989c\u8272\u521b\u5efa\u70ed\u56fe<\/strong><\/span><\/h2>\n<p><span style=\"color: #000000;\">\u6211\u4eec\u8fd8\u53ef\u4ee5\u4f7f\u7528<strong>colorRampPalette<\/strong>\u53c2\u6570\u6765\u6307\u5b9a\u70ed\u56fe\u4e2d\u7684\u4f4e\u3001\u4e2d\u3001\u9ad8\u503c\u4f7f\u7528\u54ea\u4e9b\u989c\u8272\uff1a<\/span> <\/p>\n<pre style=\"background-color: #ececec; font-size: 15px;\"> <strong><span style=\"color: #008080;\"><span style=\"color: #000000;\"><span style=\"color: #008000;\">library<\/span> (heatmap)\n\n<span style=\"color: #008080;\">#create heatmap with custom colors<\/span>\npheatmap(data, color=colorRampPalette(c(\" <span style=\"color: #ff0000;\">blue<\/span> \", \" <span style=\"color: #ff0000;\">white<\/span> \", \" <span style=\"color: #ff0000;\">red<\/span> \"))(20))<\/span><\/span><\/strong> <\/pre>\n<p><img decoding=\"async\" loading=\"lazy\" class=\" wp-image-35124 aligncenter\" src=\"https:\/\/statorials.org\/wp-content\/uploads\/2023\/08\/phheat3.png\" alt=\"\" width=\"507\" height=\"508\" srcset=\"\" sizes=\"auto, \"><\/p>\n<p><span style=\"color: #000000;\">\u73b0\u5728\uff0c\u4f4e\u503c\u663e\u793a\u4e3a<strong>\u84dd\u8272<\/strong>\uff0c\u4e2d\u503c\u663e\u793a\u4e3a<strong>\u767d\u8272<\/strong>\uff0c\u9ad8\u503c\u663e\u793a\u4e3a<strong>\u7ea2\u8272<\/strong>\u3002<\/span><\/p>\n<p><span style=\"color: #000000;\">\u8bf7\u968f\u610f\u6307\u5b9a\u60a8\u60f3\u8981\u4e3a\u70ed\u56fe\u521b\u5efa\u81ea\u5df1\u7684\u8272\u6807\u7684\u989c\u8272\u3002<\/span><\/p>\n<h2><span style=\"color: #000000;\"><strong>\u5176\u4ed6\u8d44\u6e90<\/strong><\/span><\/h2>\n<p><span style=\"color: #000000;\">\u4ee5\u4e0b\u6559\u7a0b\u89e3\u91ca\u4e86\u5982\u4f55\u5728 R \u4e2d\u6267\u884c\u5176\u4ed6\u5e38\u89c1\u4efb\u52a1\uff1a<\/span><\/p>\n<p><a href=\"https:\/\/statorials.org\/cn\/r\u4e2d\u7684\u76f8\u5173\u70ed\u56fe\/\" target=\"_blank\" rel=\"noopener\">\u5982\u4f55\u5728 R \u4e2d\u521b\u5efa\u76f8\u5173\u70ed\u56fe<\/a><br \/><a href=\"https:\/\/statorials.org\/cn\/r-ggplot2-\u70ed\u56fe\/\" target=\"_blank\" rel=\"noopener\">\u5982\u4f55\u4f7f\u7528 ggplot2 \u5728 R \u4e2d\u521b\u5efa\u70ed\u56fe<\/a><br \/><a href=\"https:\/\/statorials.org\/cn\/\u5728-r-\u4e2d\u7ed8\u5236\u5206\u7c7b\u6570\u636e\/\" target=\"_blank\" rel=\"noopener\">\u5982\u4f55\u5728 R \u4e2d\u7ed8\u5236\u5206\u7c7b\u6570\u636e<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u60a8\u53ef\u4ee5\u4f7f\u7528 R \u4e2dpheatmap\u5305\u7684pheatmap()\u51fd\u6570\u6765\u521b\u5efa\u9ad8\u5ea6\u81ea\u5b9a\u4e49\u7684\u70ed\u56fe\u3002 \u4ee5\u4e0b\u793a\u4f8b\u5c55\u793a\u4e86\u5982\u4f55\u5728\u5b9e [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[11],"tags":[],"class_list":["post-4494","post","type-post","status-publish","format-standard","hentry","category-11"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v21.5 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>\u5982\u4f55\u5728 R \u4e2d\u4f7f\u7528 pheatmap() \u521b\u5efa\u70ed\u56fe \u2013 Statorials<\/title>\n<meta name=\"description\" content=\"\u672c\u6559\u7a0b\u901a\u8fc7\u51e0\u4e2a\u793a\u4f8b\u89e3\u91ca\u4e86\u5982\u4f55\u4f7f\u7528 R \u4e2d\u7684 heatmap() \u51fd\u6570\u521b\u5efa\u70ed\u56fe\" \/>\n<meta name=\"robots\" content=\"index, follow, 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