{"id":2657,"date":"2023-07-21T07:12:29","date_gmt":"2023-07-21T07:12:29","guid":{"rendered":"https:\/\/statorials.org\/ja\/%e3%83%95%e3%82%99%e3%83%ac%e3%82%a4%e3%83%bb%e3%82%ab%e3%83%bc%e3%83%86%e3%82%a3%e3%82%b9%e3%81%aer%e3%81%ae%e7%9b%b8%e9%81%95%e7%82%b9\/"},"modified":"2023-07-21T07:12:29","modified_gmt":"2023-07-21T07:12:29","slug":"%e3%83%95%e3%82%99%e3%83%ac%e3%82%a4%e3%83%bb%e3%82%ab%e3%83%bc%e3%83%86%e3%82%a3%e3%82%b9%e3%81%aer%e3%81%ae%e7%9b%b8%e9%81%95%e7%82%b9","status":"publish","type":"post","link":"https:\/\/statorials.org\/ja\/%e3%83%95%e3%82%99%e3%83%ac%e3%82%a4%e3%83%bb%e3%82%ab%e3%83%bc%e3%83%86%e3%82%a3%e3%82%b9%e3%81%aer%e3%81%ae%e7%9b%b8%e9%81%95%e7%82%b9\/","title":{"rendered":"R \u3067\u30d6\u30ec\u30a4\u3068\u30ab\u30fc\u30c6\u30a3\u30b9\u306e\u76f8\u9055\u5ea6\u3092\u8a08\u7b97\u3059\u308b\u65b9\u6cd5"},"content":{"rendered":"<p><\/p>\n<hr>\n<p><span style=\"color: #000000;\"><a href=\"https:\/\/statorials.org\/ja\/\u30d5\u3099\u30ec\u30a4\u30fb\u30ab\u30fc\u30c6\u30a3\u30b9\u306e\u76f8\u9055\u70b9\/\" target=\"_blank\" rel=\"noopener\">Bray-Curtis \u306e\u76f8\u9055\u5ea6\u306f\u3001<\/a> 2 \u3064\u306e\u7570\u306a\u308b\u30b5\u30a4\u30c8\u9593\u306e\u76f8\u9055\u5ea6\u3092\u6e2c\u5b9a\u3059\u308b\u65b9\u6cd5\u3067\u3059\u3002<\/span><\/p>\n<p><span style=\"color: #000000;\">\u3053\u308c\u306f\u3001\u751f\u614b\u5b66\u3084\u751f\u7269\u5b66\u306b\u304a\u3044\u3066\u30012 \u3064\u306e\u5834\u6240\u3067\u898b\u3089\u308c\u308b\u7a2e\u306e\u89b3\u70b9\u304b\u3089 2 \u3064\u306e\u5834\u6240\u306e\u9055\u3044\u3092\u5b9a\u91cf\u5316\u3059\u308b\u305f\u3081\u306b\u3088\u304f\u4f7f\u7528\u3055\u308c\u307e\u3059\u3002<\/span><\/p>\n<p><span style=\"color: #000000;\">\u6b21\u306e\u3088\u3046\u306b\u8a08\u7b97\u3055\u308c\u307e\u3059\u3002<\/span><\/p>\n<p> <span style=\"color: #000000;\"><strong>BC <sub>ij<\/sub> = 1 \u2013 (2*C <sub>ij<\/sub> ) \/ (S <sub>i<\/sub> + S <sub>j<\/sub> )<\/strong><\/span><\/p>\n<p><span style=\"color: #000000;\">\u91d1\uff1a<\/span><\/p>\n<ul>\n<li> <span style=\"color: #000000;\"><strong>C <sub>ij<\/sub> :<\/strong>\u5404\u30b5\u30a4\u30c8\u3067\u898b\u3064\u304b\u3063\u305f\u7a2e\u306e\u6700\u5c0f\u5024\u306e\u5408\u8a08\u3002<\/span><\/li>\n<li> <span style=\"color: #000000;\"><strong>S <sub>i<\/sub> :<\/strong>\u30b5\u30a4\u30c8<em>i<\/em>\u3067\u8a08\u6570\u3055\u308c\u305f\u691c\u4f53\u306e\u7dcf\u6570<\/span><\/li>\n<li><span style=\"color: #000000;\"><strong>S <sub>j<\/sub> :<\/strong>\u30b5\u30a4\u30c8<em>j<\/em>\u3067\u8a08\u6570\u3055\u308c\u305f\u691c\u4f53\u306e\u7dcf\u6570<\/span><\/li>\n<\/ul>\n<p><span style=\"color: #000000;\">\u30d6\u30ec\u30a4\u3068\u30ab\u30fc\u30c6\u30a3\u30b9\u306e\u76f8\u9055\u5ea6\u306f\u5e38\u306b 0 \u3068 1 \u306e\u9593\u306b\u3042\u308a\u307e\u3059\u3002\u3053\u3053\u3067\u3001<\/span><\/p>\n<ul>\n<li> <span style=\"color: #000000;\"><strong>0 \u306f<\/strong>\u30012 \u3064\u306e\u30b5\u30a4\u30c8\u306b\u975e\u985e\u4f3c\u6027\u304c\u306a\u3044\u3053\u3068\u3092\u793a\u3057\u307e\u3059\u3002\u8a00\u3044\u63db\u3048\u308c\u3070\u3001\u5404\u7a2e\u985e\u306e\u7a2e\u306e\u6570\u304c\u307e\u3063\u305f\u304f\u540c\u3058\u306b\u306a\u308a\u307e\u3059\u3002<\/span><\/li>\n<li> <span style=\"color: #000000;\"><strong>1 \u306f<\/strong>\u30012 \u3064\u306e\u30b5\u30a4\u30c8\u304c\u5b8c\u5168\u306b\u985e\u4f3c\u3057\u3066\u3044\u306a\u3044\u3053\u3068\u3092\u793a\u3057\u307e\u3059\u3002\u8a00\u3044\u63db\u3048\u308c\u3070\u3001\u305d\u308c\u3089\u306f\u540c\u3058\u7a2e\u985e\u306e\u7a2e\u3092\u5171\u6709\u3057\u307e\u305b\u3093\u3002<\/span><\/li>\n<\/ul>\n<p><span style=\"color: #000000;\">\u305f\u3068\u3048\u3070\u3001\u690d\u7269\u5b66\u8005\u304c\u5916\u51fa\u3057\u3066\u30012 \u3064\u306e\u7570\u306a\u308b\u5834\u6240\u3067 5 \u3064\u306e\u7570\u306a\u308b\u690d\u7269\u7a2e (A\u3001B\u3001C\u3001D\u3001\u304a\u3088\u3073 E) \u306e\u6570\u3092\u6570\u3048\u305f\u3068\u3057\u307e\u3059\u3002<\/span><\/p>\n<p><span style=\"color: #000000;\">\u6b21\u306e\u8868\u306f\u3001\u5f7c\u5973\u304c\u53ce\u96c6\u3057\u305f\u30c7\u30fc\u30bf\u3092\u307e\u3068\u3081\u305f\u3082\u306e\u3067\u3059\u3002<\/span> <\/p>\n<p><img decoding=\"async\" loading=\"lazy\" class=\"aligncenter wp-image-15115 \" src=\"https:\/\/statorials.org\/wp-content\/uploads\/2023\/08\/bray_curtis.png\" alt=\"\" width=\"423\" height=\"121\" srcset=\"\" sizes=\"auto, \"><\/p>\n<p><span style=\"color: #000000;\">\u3053\u306e\u30c7\u30fc\u30bf\u3092\u4f7f\u7528\u3059\u308b\u3068\u3001\u6b21\u306e\u3088\u3046\u306b\u30d6\u30ec\u30a4\u3068\u30ab\u30fc\u30c6\u30a3\u30b9\u306e\u76f8\u9055\u5ea6\u3092\u8a08\u7b97\u3067\u304d\u307e\u3059\u3002<\/span> <\/p>\n<p><img decoding=\"async\" loading=\"lazy\" class=\"aligncenter wp-image-15116 \" src=\"https:\/\/statorials.org\/wp-content\/uploads\/2023\/08\/bray_curtis2.png\" alt=\"\u30d6\u30ec\u30a4\u3068\u30ab\u30fc\u30c6\u30a3\u30b9\u306e\u9055\u3044\" width=\"419\" height=\"226\" srcset=\"\" sizes=\"auto, \"><\/p>\n<p><span style=\"color: #000000;\">\u3053\u308c\u3089\u306e\u6570\u5024\u3092 Bray-Curtis \u306e\u76f8\u9055\u5ea6\u306e\u516c\u5f0f\u306b\u7d71\u5408\u3059\u308b\u3068\u3001\u6b21\u306e\u7d50\u679c\u304c\u5f97\u3089\u308c\u307e\u3059\u3002<\/span><\/p>\n<ul>\n<li> <span style=\"color: #000000;\">BC <sub>ij<\/sub> = 1 \u2013 (2*C <sub>ij<\/sub> ) \/ (S <sub>i<\/sub> + S <sub>j<\/sub> )<\/span><\/li>\n<li> <span style=\"color: #000000;\">BC <sub>ij<\/sub> = 1 \u2013 (2*15) \/ (21 + 24)<\/span><\/li>\n<li> <span style=\"color: #000000;\">BC <sub>ij<\/sub> = 0.33<\/span><\/li>\n<\/ul>\n<p><span style=\"color: #000000;\">\u3053\u308c\u3089 2 \u3064\u306e\u30b5\u30a4\u30c8\u9593\u306e Bray-Curtis \u306e\u76f8\u9055\u5ea6\u306f<strong>0.33<\/strong>\u3067\u3059\u3002<\/span><\/p>\n<p><span style=\"color: #000000;\">\u6b21\u306e\u4f8b\u306f\u3001R \u3067 Bray-Curtis \u306e\u76f8\u9055\u5ea6\u3092\u8a08\u7b97\u3059\u308b\u65b9\u6cd5\u3092\u793a\u3057\u3066\u3044\u307e\u3059\u3002<\/span><\/p>\n<h3><span style=\"color: #000000;\"><strong>\u4f8b: R \u3067\u306e\u30d6\u30ec\u30a4\u3068\u30ab\u30fc\u30c6\u30a3\u30b9\u306e\u76f8\u9055\u5ea6\u306e\u8a08\u7b97<\/strong><\/span><\/h3>\n<p><span style=\"color: #000000;\">\u307e\u305a\u3001\u30c7\u30fc\u30bf\u5024\u3092\u4fdd\u6301\u3059\u308b\u305f\u3081\u306b R \u3067\u6b21\u306e\u30c7\u30fc\u30bf \u30d5\u30ec\u30fc\u30e0\u3092\u4f5c\u6210\u3057\u307e\u3057\u3087\u3046\u3002<\/span><\/p>\n<pre style=\"background-color: #ececec; font-size: 15px;\"> <strong><span style=\"color: #008080;\">#create data frame\n<\/span>df &lt;- data. <span style=\"color: #3366ff;\">frame<\/span> (A=c(4, 3),\n                 B=c(0, 6),\n                 C=c(2, 0),\n                 D=c(7, 4),\n                 E=c(8, 11))\n\n<span style=\"color: #008080;\">#view data frame\n<\/span>df\n\n  A B C D E\n1 4 0 2 7 8\n2 3 6 0 4 11<\/strong><\/pre>\n<p><span style=\"color: #000000;\">\u6b21\u306e\u30b3\u30fc\u30c9\u3092\u4f7f\u7528\u3057\u3066\u3001\u30c7\u30fc\u30bf \u30d5\u30ec\u30fc\u30e0\u5185\u306e 2 \u3064\u306e\u884c\u9593\u306e Bray-Curtis \u306e\u975e\u985e\u4f3c\u5ea6\u3092\u8a08\u7b97\u3067\u304d\u307e\u3059\u3002<\/span><\/p>\n<pre style=\"background-color: #ececec; font-size: 15px;\"> <strong><span style=\"color: #008080;\">#calculate Bray\u2013Curtis dissimilarity\n<\/span>sum( <span style=\"color: #3366ff;\">apply<\/span> (df, 2, <span style=\"color: #3366ff;\">function<\/span> (x) <span style=\"color: #3366ff;\">abs<\/span> ( <span style=\"color: #3366ff;\">max<\/span> (x)- <span style=\"color: #3366ff;\">min<\/span> (x)))) \/ <span style=\"color: #3366ff;\">sum<\/span> ( <span style=\"color: #3366ff;\">rowSums<\/span> (df))\n\n[1] 0.3333333\n<\/strong><\/pre>\n<p> <span style=\"color: #000000;\">Bray-Curtis \u306f<strong>0.33<\/strong>\u3067\u3042\u308b\u3053\u3068\u304c\u5224\u660e\u3057\u307e\u3057\u305f\u3002<\/span><\/p>\n<p><span style=\"color: #000000;\">\u3053\u308c\u306f\u3001\u4ee5\u524d\u306b\u624b\u52d5\u3067\u8a08\u7b97\u3057\u305f\u5024\u3068\u4e00\u81f4\u3057\u307e\u3059\u3002<\/span><\/p>\n<p><span style=\"color: #000000;\"><strong>\u6ce8<\/strong>: \u3053\u306e\u6570\u5f0f\u306f\u3001\u30c7\u30fc\u30bf \u30d5\u30ec\u30fc\u30e0\u5185\u306e\u5404\u884c\u304c\u500b\u5225\u306e\u30b5\u30a4\u30c8\u3092\u8868\u3059\u5834\u5408\u306b\u306e\u307f\u6a5f\u80fd\u3057\u307e\u3059\u3002<\/span><\/p>\n<h3><span style=\"color: #000000;\"><strong>\u8ffd\u52a0\u30ea\u30bd\u30fc\u30b9<\/strong><\/span><\/h3>\n<p><span style=\"color: #000000;\">\u6b21\u306e\u30c1\u30e5\u30fc\u30c8\u30ea\u30a2\u30eb\u3067\u306f\u3001R \u3067\u4ed6\u306e\u985e\u4f3c\u6027\u30e1\u30c8\u30ea\u30af\u30b9\u3092\u8a08\u7b97\u3059\u308b\u65b9\u6cd5\u3092\u8aac\u660e\u3057\u307e\u3059\u3002<\/span><\/p>\n<p> <a href=\"https:\/\/statorials.org\/ja\/r-\u306e\u30b7\u3099\u30e3\u30c3\u30ab\u30fc\u30c8\u3099\u985e\u4f3c\u5ea6\/\" target=\"_blank\" rel=\"noopener\">R \u3067 Jaccard \u985e\u4f3c\u5ea6\u3092\u8a08\u7b97\u3059\u308b\u65b9\u6cd5<\/a><br \/><a href=\"https:\/\/statorials.org\/ja\/\u30b3\u30b5\u30a4\u30f3\u985e\u4f3c\u5ea6-r\/\" target=\"_blank\" rel=\"noopener\">R \u3067\u30b3\u30b5\u30a4\u30f3\u985e\u4f3c\u5ea6\u3092\u8a08\u7b97\u3059\u308b\u65b9\u6cd5<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Bray-Curtis \u306e\u76f8\u9055\u5ea6\u306f\u3001 2 \u3064\u306e\u7570\u306a\u308b\u30b5\u30a4\u30c8\u9593\u306e\u76f8\u9055\u5ea6\u3092\u6e2c\u5b9a\u3059\u308b\u65b9\u6cd5\u3067\u3059\u3002 \u3053\u308c\u306f\u3001\u751f\u614b\u5b66\u3084\u751f\u7269\u5b66\u306b\u304a\u3044\u3066\u30012 \u3064\u306e\u5834\u6240\u3067\u898b\u3089\u308c\u308b\u7a2e\u306e\u89b3\u70b9\u304b\u3089 2 \u3064\u306e\u5834\u6240\u306e\u9055\u3044\u3092\u5b9a\u91cf\u5316\u3059\u308b\u305f\u3081\u306b\u3088\u304f\u4f7f\u7528\u3055\u308c\u307e\u3059\u3002 \u6b21\u306e\u3088 [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[16],"tags":[],"class_list":["post-2657","post","type-post","status-publish","format-standard","hentry","category-16"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v21.5 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>R \u3067\u30d6\u30ec\u30a4\u3068\u30ab\u30fc\u30c6\u30a3\u30b9\u306e\u76f8\u9055\u5ea6\u3092\u8a08\u7b97\u3059\u308b\u65b9\u6cd5 - Statorials<\/title>\n<meta name=\"description\" content=\"\u3053\u306e\u30c1\u30e5\u30fc\u30c8\u30ea\u30a2\u30eb\u3067\u306f\u3001R \u3067 Bray-Curtis 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