{"id":4488,"date":"2023-07-10T16:35:21","date_gmt":"2023-07-10T16:35:21","guid":{"rendered":"https:\/\/statorials.org\/ja\/%e3%83%92%e3%83%bc%e3%83%88%e3%83%9e%e3%83%83%e3%83%95%e3%82%9ar\/"},"modified":"2023-07-10T16:35:21","modified_gmt":"2023-07-10T16:35:21","slug":"%e3%83%92%e3%83%bc%e3%83%88%e3%83%9e%e3%83%83%e3%83%95%e3%82%9ar","status":"publish","type":"post","link":"https:\/\/statorials.org\/ja\/%e3%83%92%e3%83%bc%e3%83%88%e3%83%9e%e3%83%83%e3%83%95%e3%82%9ar\/","title":{"rendered":"R \u3067 pheatmap() \u3092\u4f7f\u7528\u3057\u3066\u30d2\u30fc\u30c8\u30de\u30c3\u30d7\u3092\u4f5c\u6210\u3059\u308b\u65b9\u6cd5"},"content":{"rendered":"<p><\/p>\n<hr>\n<p><span style=\"color: #000000;\">R \u306e<strong>pheatmap<\/strong>\u30d1\u30c3\u30b1\u30fc\u30b8\u306e<strong>pheatmap()<\/strong>\u95a2\u6570\u3092\u4f7f\u7528\u3057\u3066\u3001\u9ad8\u5ea6\u306b\u30ab\u30b9\u30bf\u30de\u30a4\u30ba\u3055\u308c\u305f\u30d2\u30fc\u30c8\u30de\u30c3\u30d7\u3092\u4f5c\u6210\u3067\u304d\u307e\u3059\u3002<\/span><\/p>\n<p><span style=\"color: #000000;\">\u6b21\u306e\u4f8b\u306f\u3001\u6b21\u306e\u507d\u306e\u30c7\u30fc\u30bf\u30bb\u30c3\u30c8\u3092\u4f7f\u7528\u3057\u3066\u3053\u306e\u95a2\u6570\u3092\u5b9f\u969b\u306b\u4f7f\u7528\u3059\u308b\u65b9\u6cd5\u3092\u793a\u3057\u3066\u3044\u307e\u3059\u3002<\/span><\/p>\n<pre style=\"background-color: #ececec; font-size: 15px;\"> <strong><span style=\"color: #008080;\">#make this example reproducible\n<\/span>set. <span style=\"color: #3366ff;\">seeds<\/span> (1)\n\n<span style=\"color: #008080;\">#create matrix with fake data values\n<\/span>data = matrix(rnorm(100), 20, 5)\ndata[1:10, seq(1, 5, 1)] = data[1:10, seq(1, 5, 1)] + 3\ndata [11:20, seq(2, 5, 1)] = data [11:20, seq(2, 5, 1)] + 2\ndata [15:20, seq(2, 5, 1)] = data [15:20, seq(2, 5, 1)] + 4\n\n<span style=\"color: #008080;\">#add column names and row names\n<\/span>colnames(data) = paste(\" <span style=\"color: #ff0000;\">T<\/span> \", 1:5, sep = \"\")\nrownames(data) = paste(\" <span style=\"color: #ff0000;\">Gene<\/span> \", 1:20, sep=\"\")\n\n<span style=\"color: #008080;\">#view matrx\n<\/span>data\n\n                T1 T2 T3 T4 T5\nGene1 2.37354619 3.918977 2.8354764 5.401618 2.431331\nGene2 3.18364332 3.782136 2.7466383 2.960760 2.864821\nGene3 2.16437139 3.074565 3.6969634 3.689739 4.178087\nGene4 4.59528080 1.010648 3.5566632 3.028002 1.476433\nGene5 3.32950777 3.619826 2.3112443 2.256727 3.593946\nGene6 2.17953162 2.943871 2.2925048 3.188792 3.332950\nGene7 3.48742905 2.844204 3.3645820 1.195041 4.063100\nGene8 3.73832471 1.529248 3.7685329 4.465555 2.695816\nGene9 3.57578135 2.521850 2.8876538 3.153253 3.370019\nGene10 2.69461161 3.417942 3.8811077 5.172612 3.267099\nGene11 1.51178117 3.358680 2.3981059 2.475510 1.457480\nGene12 0.38984324 1.897212 1.3879736 1.290054 3.207868\nGene13 -0.62124058 2.387672 2.3411197 2.610726 3.160403\nGene14 -2.21469989 1.946195 0.8706369 1.065902 2.700214\nGene15 1.12493092 4.622940 7.4330237 4.746367 7.586833\nGene16 -0.04493361 5.585005 7.9803999 6.291446 6.558486\nGene17 -0.01619026 5.605710 5.6327785 5.556708 4.723408\nGene18 0.94383621 5.940687 4.9558654 6.001105 5.426735\nGene19 0.82122120 7.100025 6.5697196 6.074341 4.775387\nGene20 0.59390132 6.763176 5.8649454 5.410479 5.526599<\/strong><\/pre>\n<h2><span style=\"color: #000000;\"><strong>\u4f8b 1: \u57fa\u672c\u7684\u306a\u30d2\u30fc\u30c8 \u30de\u30c3\u30d7\u3092\u4f5c\u6210\u3059\u308b<\/strong><\/span><\/h2>\n<p><span style=\"color: #000000;\">\u30d2\u30fc\u30c8\u30de\u30c3\u30d7\u306e\u30c7\u30d5\u30a9\u30eb\u30c8\u8a2d\u5b9a\u3067<strong>\u30d2\u30fc\u30c8<\/strong>\u30de\u30c3\u30d7\u3092\u4f5c\u6210\u3057\u3001\u3059\u3079\u3066\u306e\u30de\u30c8\u30ea\u30c3\u30af\u30b9\u5024\u3092\u8996\u899a\u5316\u3067\u304d\u307e\u3059\u3002<\/span> <\/p>\n<pre style=\"background-color: #ececec; font-size: 15px;\"> <strong><span style=\"color: #008080;\"><span style=\"color: #000000;\"><span style=\"color: #008000;\">library<\/span> (heatmap)\n\n<span style=\"color: #008080;\">#create basic heatmap<\/span>\npheatmap(data)<\/span><\/span><\/strong> <\/pre>\n<p><img decoding=\"async\" loading=\"lazy\" class=\"aligncenter wp-image-35122\" src=\"https:\/\/statorials.org\/wp-content\/uploads\/2023\/08\/phheat1.png\" alt=\"R \u3067\u306e Pheatmap \u306e\u4f8b\" width=\"502\" height=\"503\" srcset=\"\" sizes=\"auto, \"><\/p>\n<h2><span style=\"color: #000000;\"><strong>\u4f8b 2: \u30bb\u30eb \u30e9\u30d9\u30eb\u3092\u4f7f\u7528\u3057\u3066\u30d2\u30fc\u30c8 \u30de\u30c3\u30d7\u3092\u4f5c\u6210\u3059\u308b<\/strong><\/span><\/h2>\n<p><span style=\"color: #000000;\"><strong>display_numbers<\/strong>\u304a\u3088\u3073<strong>fontsize_number<\/strong>\u5f15\u6570\u3092\u4f7f\u7528\u3057\u3066\u3001\u30d2\u30fc\u30c8\u30de\u30c3\u30d7\u306e\u5404\u30bb\u30eb\u306e\u6570\u5024\u3092\u7279\u5b9a\u306e\u30d5\u30a9\u30f3\u30c8 \u30b5\u30a4\u30ba\u3067\u8868\u793a\u3059\u308b\u3088\u3046\u306b\u4f5c\u6210\u3067\u304d\u307e\u3059\u3002<\/span> <\/p>\n<pre style=\"background-color: #ececec; font-size: 15px;\"> <strong><span style=\"color: #008080;\"><span style=\"color: #000000;\"><span style=\"color: #008000;\">library<\/span> (heatmap)\n\n<span style=\"color: #008080;\">#create heatmap with numerical labels in cells<\/span>\npheatmap(data, display_numbers= <span style=\"color: #008000;\">TRUE<\/span> , fontsize_number= <span style=\"color: #008000;\">12<\/span> )\n<\/span><\/span><\/strong><\/pre>\n<p><img decoding=\"async\" loading=\"lazy\" class=\" wp-image-35123 aligncenter\" src=\"https:\/\/statorials.org\/wp-content\/uploads\/2023\/08\/phheat2.png\" alt=\"\" width=\"492\" height=\"481\" srcset=\"\" sizes=\"auto, \"><\/p>\n<p><span style=\"color: #000000;\"><strong>\u6ce8<\/strong>: <strong>fontsize_number<\/strong>\u306e\u30c7\u30d5\u30a9\u30eb\u30c8\u5024\u306f<strong>8<\/strong>\u3067\u3059\u3002<\/span><\/p>\n<h2><span style=\"color: #000000;\"><strong>\u4f8b 3: \u30ab\u30b9\u30bf\u30e0 \u30ab\u30e9\u30fc\u3092\u4f7f\u7528\u3057\u3066\u30d2\u30fc\u30c8 \u30de\u30c3\u30d7\u3092\u4f5c\u6210\u3059\u308b<\/strong><\/span><\/h2>\n<p><span style=\"color: #000000;\"><strong>colorRampPalette<\/strong>\u5f15\u6570\u3092\u4f7f\u7528\u3057\u3066\u3001\u30d2\u30fc\u30c8\u30de\u30c3\u30d7\u306e\u4f4e\u3001\u4e2d\u3001\u9ad8\u306e\u5024\u306b\u4f7f\u7528\u3059\u308b\u8272\u3092\u6307\u5b9a\u3059\u308b\u3053\u3068\u3082\u3067\u304d\u307e\u3059\u3002<\/span> <\/p>\n<pre style=\"background-color: #ececec; font-size: 15px;\"> <strong><span style=\"color: #008080;\"><span style=\"color: #000000;\"><span style=\"color: #008000;\">library<\/span> (heatmap)\n\n<span style=\"color: #008080;\">#create heatmap with custom colors<\/span>\npheatmap(data, color=colorRampPalette(c(\" <span style=\"color: #ff0000;\">blue<\/span> \", \" <span style=\"color: #ff0000;\">white<\/span> \", \" <span style=\"color: #ff0000;\">red<\/span> \"))(20))<\/span><\/span><\/strong> <\/pre>\n<p><img decoding=\"async\" loading=\"lazy\" class=\" wp-image-35124 aligncenter\" src=\"https:\/\/statorials.org\/wp-content\/uploads\/2023\/08\/phheat3.png\" alt=\"\" width=\"507\" height=\"508\" srcset=\"\" sizes=\"auto, \"><\/p>\n<p><span style=\"color: #000000;\">\u4f4e\u3044\u5024\u306f<strong>\u9752<\/strong>\u3001\u4e2d\u7a0b\u5ea6\u306e\u5024\u306f<strong>\u767d<\/strong>\u3001\u9ad8\u3044\u5024\u306f<strong>\u8d64<\/strong>\u3067\u8868\u793a\u3055\u308c\u308b\u3088\u3046\u306b\u306a\u308a\u307e\u3057\u305f\u3002<\/span><\/p>\n<p><span style=\"color: #000000;\">\u5e0c\u671b\u306e\u8272\u3092\u81ea\u7531\u306b\u6307\u5b9a\u3057\u3066\u3001\u30d2\u30fc\u30c8 \u30de\u30c3\u30d7\u7528\u306e\u72ec\u81ea\u306e\u30ab\u30e9\u30fc \u30b9\u30b1\u30fc\u30eb\u3092\u4f5c\u6210\u3057\u307e\u3059\u3002<\/span><\/p>\n<h2><span style=\"color: #000000;\"><strong>\u8ffd\u52a0\u30ea\u30bd\u30fc\u30b9<\/strong><\/span><\/h2>\n<p><span style=\"color: #000000;\">\u6b21\u306e\u30c1\u30e5\u30fc\u30c8\u30ea\u30a2\u30eb\u3067\u306f\u3001R \u3067\u4ed6\u306e\u4e00\u822c\u7684\u306a\u30bf\u30b9\u30af\u3092\u5b9f\u884c\u3059\u308b\u65b9\u6cd5\u306b\u3064\u3044\u3066\u8aac\u660e\u3057\u307e\u3059\u3002<\/span><\/p>\n<p> <a href=\"https:\/\/statorials.org\/ja\/r-\u306e\u76f8\u95a2\u30d2\u30fc\u30c8\u30de\u30c3\u30d5\u309a\/\" target=\"_blank\" rel=\"noopener\">R \u3067\u76f8\u95a2\u30d2\u30fc\u30c8\u30de\u30c3\u30d7\u3092\u4f5c\u6210\u3059\u308b\u65b9\u6cd5<\/a><br \/><a href=\"https:\/\/statorials.org\/ja\/\u30d2\u30fc\u30c8\u30de\u30c3\u30d5\u309a-r-ggplot2\/\" target=\"_blank\" rel=\"noopener\">ggplot2 \u3092\u4f7f\u7528\u3057\u3066 R \u3067\u30d2\u30fc\u30c8 \u30de\u30c3\u30d7\u3092\u4f5c\u6210\u3059\u308b\u65b9\u6cd5<\/a><br \/><a href=\"https:\/\/statorials.org\/ja\/\u30ab\u30c6\u30b3\u3099\u30ea\u30c6\u3099\u30fc\u30bf\u3092-r-\u306b\u30d5\u309a\u30ed\u30c3\u30c8\u3059\u308b\/\" target=\"_blank\" rel=\"noopener\">R \u3067\u30ab\u30c6\u30b4\u30ea\u30ab\u30eb \u30c7\u30fc\u30bf\u3092\u30d7\u30ed\u30c3\u30c8\u3059\u308b\u65b9\u6cd5<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>R \u306epheatmap\u30d1\u30c3\u30b1\u30fc\u30b8\u306epheatmap()\u95a2\u6570\u3092\u4f7f\u7528\u3057\u3066\u3001\u9ad8\u5ea6\u306b\u30ab\u30b9\u30bf\u30de\u30a4\u30ba\u3055\u308c\u305f\u30d2\u30fc\u30c8\u30de\u30c3\u30d7\u3092\u4f5c\u6210\u3067\u304d\u307e\u3059\u3002 \u6b21\u306e\u4f8b\u306f\u3001\u6b21\u306e\u507d\u306e\u30c7\u30fc\u30bf\u30bb\u30c3\u30c8\u3092\u4f7f\u7528\u3057\u3066\u3053\u306e\u95a2\u6570\u3092\u5b9f\u969b\u306b\u4f7f\u7528\u3059\u308b\u65b9\u6cd5\u3092\u793a\u3057\u3066\u3044\u307e\u3059\u3002 #make [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[16],"tags":[],"class_list":["post-4488","post","type-post","status-publish","format-standard","hentry","category-16"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v21.5 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>R \u3067 pheatmap() \u3092\u4f7f\u7528\u3057\u3066\u30d2\u30fc\u30c8\u30de\u30c3\u30d7\u3092\u4f5c\u6210\u3059\u308b\u65b9\u6cd5 \u2013 \u8a18\u4e8b<\/title>\n<meta name=\"description\" content=\"\u3053\u306e\u30c1\u30e5\u30fc\u30c8\u30ea\u30a2\u30eb\u3067\u306f\u3001R \u3067 heatmap() \u95a2\u6570\u3092\u4f7f\u7528\u3057\u3066\u30d2\u30fc\u30c8\u30de\u30c3\u30d7\u3092\u4f5c\u6210\u3059\u308b\u65b9\u6cd5\u3092\u3001\u3044\u304f\u3064\u304b\u306e\u4f8b\u3068\u3068\u3082\u306b\u8aac\u660e\u3057\u307e\u3059\u3002\" \/>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/statorials.org\/ja\/\u30d2\u30fc\u30c8\u30de\u30c3\u30d5\u309ar\/\" \/>\n<meta property=\"og:locale\" content=\"ja_JP\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"R \u3067 pheatmap() \u3092\u4f7f\u7528\u3057\u3066\u30d2\u30fc\u30c8\u30de\u30c3\u30d7\u3092\u4f5c\u6210\u3059\u308b\u65b9\u6cd5 \u2013 \u8a18\u4e8b\" \/>\n<meta property=\"og:description\" content=\"\u3053\u306e\u30c1\u30e5\u30fc\u30c8\u30ea\u30a2\u30eb\u3067\u306f\u3001R \u3067 heatmap() \u95a2\u6570\u3092\u4f7f\u7528\u3057\u3066\u30d2\u30fc\u30c8\u30de\u30c3\u30d7\u3092\u4f5c\u6210\u3059\u308b\u65b9\u6cd5\u3092\u3001\u3044\u304f\u3064\u304b\u306e\u4f8b\u3068\u3068\u3082\u306b\u8aac\u660e\u3057\u307e\u3059\u3002\" \/>\n<meta property=\"og:url\" content=\"https:\/\/statorials.org\/ja\/\u30d2\u30fc\u30c8\u30de\u30c3\u30d5\u309ar\/\" \/>\n<meta property=\"og:site_name\" content=\"Statorials\" \/>\n<meta property=\"article:published_time\" content=\"2023-07-10T16:35:21+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/statorials.org\/wp-content\/uploads\/2023\/08\/phheat1.png\" \/>\n<meta name=\"author\" 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\u3092\u4f7f\u7528\u3057\u3066\u30d2\u30fc\u30c8\u30de\u30c3\u30d7\u3092\u4f5c\u6210\u3059\u308b\u65b9\u6cd5 \u2013 \u8a18\u4e8b\",\"isPartOf\":{\"@id\":\"https:\/\/statorials.org\/ja\/#website\"},\"datePublished\":\"2023-07-10T16:35:21+00:00\",\"dateModified\":\"2023-07-10T16:35:21+00:00\",\"author\":{\"@id\":\"https:\/\/statorials.org\/ja\/#\/schema\/person\/86b92d2dd87368b26360d19d9c6a5d83\"},\"description\":\"\u3053\u306e\u30c1\u30e5\u30fc\u30c8\u30ea\u30a2\u30eb\u3067\u306f\u3001R \u3067 heatmap() 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