{"id":4493,"date":"2023-07-10T16:35:21","date_gmt":"2023-07-10T16:35:21","guid":{"rendered":"https:\/\/statorials.org\/my\/pheatmap-r\/"},"modified":"2023-07-10T16:35:21","modified_gmt":"2023-07-10T16:35:21","slug":"pheatmap-r","status":"publish","type":"post","link":"https:\/\/statorials.org\/my\/pheatmap-r\/","title":{"rendered":"\u1021\u1015\u1030\u1019\u103c\u1031\u1015\u102f\u1036\u1016\u1014\u103a\u1010\u102e\u1038\u101b\u1014\u103a r \u1010\u103d\u1004\u103a phetmap() \u1000\u102d\u102f\u1021\u101e\u102f\u1036\u1038\u1015\u103c\u102f\u1014\u100a\u103a\u1038"},"content":{"rendered":"<p><\/p>\n<hr>\n<p><span style=\"color: #000000;\">\u1005\u102d\u1010\u103a\u1000\u103c\u102d\u102f\u1000\u103a\u1021\u1015\u1030\u1019\u103c\u1031\u1015\u102f\u1036\u1019\u103b\u102c\u1038\u1016\u1014\u103a\u1010\u102e\u1038\u101b\u1014\u103a R \u101b\u103e\u102d <strong>phatmap<\/strong> \u1015\u1000\u103a\u1000\u1031\u1037\u1001\u103a\u103b\u104f <strong>phheatmap()<\/strong> \u101c\u102f\u1015\u103a\u1006\u1031\u102c\u1004\u103a\u1001\u103b\u1000\u103a\u1000\u102d\u102f \u101e\u1004\u103a\u1021\u101e\u102f\u1036\u1038\u1015\u103c\u102f\u1014\u102d\u102f\u1004\u103a\u1015\u102b\u101e\u100a\u103a\u104b<\/span><\/p>\n<p> <span style=\"color: #000000;\">\u1021\u1031\u102c\u1000\u103a\u1016\u1031\u102c\u103a\u1015\u103c\u1015\u102b \u1025\u1015\u1019\u102c\u1019\u103b\u102c\u1038\u101e\u100a\u103a \u1021\u1031\u102c\u1000\u103a\u1015\u102b\u1012\u1031\u1010\u102c\u1021\u1010\u103d\u1032\u1021\u1010\u102f\u1016\u103c\u1004\u1037\u103a \u1024\u101c\u102f\u1015\u103a\u1006\u1031\u102c\u1004\u103a\u1001\u103b\u1000\u103a\u1000\u102d\u102f \u101c\u1000\u103a\u1010\u103d\u1031\u1037\u1021\u101e\u102f\u1036\u1038\u1001\u103b\u1014\u100a\u103a\u1038\u1000\u102d\u102f \u1015\u103c\u101e\u101e\u100a\u103a-<\/span><\/p>\n<pre style=\"background-color: #ececec; font-size: 15px;\"> <strong><span style=\"color: #008080;\">#make this example reproducible\n<\/span>set. <span style=\"color: #3366ff;\">seeds<\/span> (1)\n\n<span style=\"color: #008080;\">#create matrix with fake data values\n<\/span>data = matrix(rnorm(100), 20, 5)\ndata[1:10, seq(1, 5, 1)] = data[1:10, seq(1, 5, 1)] + 3\ndata [11:20, seq(2, 5, 1)] = data [11:20, seq(2, 5, 1)] + 2\ndata [15:20, seq(2, 5, 1)] = data [15:20, seq(2, 5, 1)] + 4\n\n<span style=\"color: #008080;\">#add column names and row names\n<\/span>colnames(data) = paste(\" <span style=\"color: #ff0000;\">T<\/span> \", 1:5, sep = \"\")\nrownames(data) = paste(\" <span style=\"color: #ff0000;\">Gene<\/span> \", 1:20, sep=\"\")\n\n<span style=\"color: #008080;\">#view matrx\n<\/span>data\n\n                T1 T2 T3 T4 T5\nGene1 2.37354619 3.918977 2.8354764 5.401618 2.431331\nGene2 3.18364332 3.782136 2.7466383 2.960760 2.864821\nGene3 2.16437139 3.074565 3.6969634 3.689739 4.178087\nGene4 4.59528080 1.010648 3.5566632 3.028002 1.476433\nGene5 3.32950777 3.619826 2.3112443 2.256727 3.593946\nGene6 2.17953162 2.943871 2.2925048 3.188792 3.332950\nGene7 3.48742905 2.844204 3.3645820 1.195041 4.063100\nGene8 3.73832471 1.529248 3.7685329 4.465555 2.695816\nGene9 3.57578135 2.521850 2.8876538 3.153253 3.370019\nGene10 2.69461161 3.417942 3.8811077 5.172612 3.267099\nGene11 1.51178117 3.358680 2.3981059 2.475510 1.457480\nGene12 0.38984324 1.897212 1.3879736 1.290054 3.207868\nGene13 -0.62124058 2.387672 2.3411197 2.610726 3.160403\nGene14 -2.21469989 1.946195 0.8706369 1.065902 2.700214\nGene15 1.12493092 4.622940 7.4330237 4.746367 7.586833\nGene16 -0.04493361 5.585005 7.9803999 6.291446 6.558486\nGene17 -0.01619026 5.605710 5.6327785 5.556708 4.723408\nGene18 0.94383621 5.940687 4.9558654 6.001105 5.426735\nGene19 0.82122120 7.100025 6.5697196 6.074341 4.775387\nGene20 0.59390132 6.763176 5.8649454 5.410479 5.526599<\/strong><\/pre>\n<h2> <span style=\"color: #000000;\"><strong>\u1025\u1015\u1019\u102c 1- \u1021\u1001\u103c\u1031\u1001\u1036\u1021\u1015\u1030\u1019\u103c\u1031\u1015\u102f\u1036\u1016\u1014\u103a\u1010\u102e\u1038\u1015\u102b\u104b<\/strong><\/span><\/h2>\n<p> <span style=\"color: #000000;\">\u1019\u1000\u103a\u1011\u101b\u1005\u103a\u1010\u1014\u103a\u1016\u102d\u102f\u1038\u1021\u102c\u1038\u101c\u102f\u1036\u1038\u1000\u102d\u102f \u1019\u103c\u1004\u103a\u101e\u102c\u1005\u1031\u101b\u1014\u103a <strong>\u1021\u1015\u1030\u1019\u103c\u1031\u1015\u102f\u1036<\/strong> \u1010\u103d\u1004\u103a \u1019\u1030\u101b\u1004\u103a\u1038\u1006\u1000\u103a\u1010\u1004\u103a\u1019\u103b\u102c\u1038\u1016\u103c\u1004\u1037\u103a \u1021\u1015\u1030\u1019\u103c\u1031\u1015\u102f\u1036\u1010\u1005\u103a\u1001\u102f \u1016\u1014\u103a\u1010\u102e\u1038\u1014\u102d\u102f\u1004\u103a\u101e\u100a\u103a-<\/span> <\/p>\n<pre style=\"background-color: #ececec; font-size: 15px;\"> <strong><span style=\"color: #008080;\"><span style=\"color: #000000;\"><span style=\"color: #008000;\">library<\/span> (heatmap)\n\n<span style=\"color: #008080;\">#create basic heatmap<\/span>\npheatmap(data)<\/span><\/span><\/strong> <\/pre>\n<p><img decoding=\"async\" loading=\"lazy\" class=\"aligncenter wp-image-35122\" src=\"https:\/\/statorials.org\/wp-content\/uploads\/2023\/08\/phheat1.png\" alt=\"R \u1010\u103d\u1004\u103a phheatmap \u1025\u1015\u1019\u102c\" width=\"502\" height=\"503\" srcset=\"\" sizes=\"\"><\/p>\n<h2> <span style=\"color: #000000;\"><strong>\u1025\u1015\u1019\u102c 2- \u1006\u1032\u101c\u103a\u1021\u100a\u103d\u103e\u1014\u103a\u1038\u1019\u103b\u102c\u1038\u1016\u103c\u1004\u1037\u103a \u1021\u1015\u1030\u1019\u103c\u1031\u1015\u102f\u1036\u1016\u1014\u103a\u1010\u102e\u1038\u1015\u102b\u104b<\/strong><\/span><\/h2>\n<p> <span style=\"color: #000000;\">\u1010\u102d\u1000\u103b\u101e\u1031\u102c\u1016\u1031\u102c\u1004\u1037\u103a\u1021\u101b\u103d\u101a\u103a\u1021\u1005\u102c\u1038\u1016\u103c\u1004\u1037\u103a \u1021\u1015\u1030\u1019\u103c\u1031\u1015\u102f\u1036\u104f\u1006\u1032\u101c\u103a\u1010\u1005\u103a\u1001\u102f\u1005\u102e\u101b\u103e\u102d \u1000\u102d\u1014\u103a\u1038\u1002\u100f\u102c\u1014\u103a\u1038\u1010\u1014\u103a\u1016\u102d\u102f\u1038\u1019\u103b\u102c\u1038\u1000\u102d\u102f\u1015\u103c\u101e\u101b\u1014\u103a <strong>display_numbers<\/strong> \u1014\u103e\u1004\u1037\u103a <strong>fontsize_number<\/strong> \u1021\u1004\u103c\u1004\u103a\u1038\u1021\u1001\u102f\u1036\u1019\u103b\u102c\u1038\u1000\u102d\u102f \u1021\u101e\u102f\u1036\u1038\u1015\u103c\u102f\u104d \u1016\u1014\u103a\u1010\u102e\u1038\u1014\u102d\u102f\u1004\u103a\u101e\u100a\u103a-<\/span> <\/p>\n<pre style=\"background-color: #ececec; font-size: 15px;\"> <strong><span style=\"color: #008080;\"><span style=\"color: #000000;\"><span style=\"color: #008000;\">library<\/span> (heatmap)\n\n<span style=\"color: #008080;\">#create heatmap with numerical labels in cells<\/span>\npheatmap(data, display_numbers= <span style=\"color: #008000;\">TRUE<\/span> , fontsize_number= <span style=\"color: #008000;\">12<\/span> )\n<\/span><\/span><\/strong><\/pre>\n<p><img decoding=\"async\" loading=\"lazy\" class=\" wp-image-35123 aligncenter\" src=\"https:\/\/statorials.org\/wp-content\/uploads\/2023\/08\/phheat2.png\" alt=\"\" width=\"492\" height=\"481\" srcset=\"\" sizes=\"\"><\/p>\n<p> <span style=\"color: #000000;\"><strong>\u1019\u103e\u1010\u103a\u1001\u103b\u1000\u103a<\/strong> &#8211; <strong>fontsize_number<\/strong> \u1021\u1010\u103d\u1000\u103a \u1019\u1030\u101b\u1004\u103a\u1038\u1010\u1014\u103a\u1016\u102d\u102f\u1038\u1019\u103e\u102c <strong>8<\/strong> \u1016\u103c\u1005\u103a\u101e\u100a\u103a\u104b<\/span><\/p>\n<h2> <span style=\"color: #000000;\"><strong>\u1025\u1015\u1019\u102c 3- \u1005\u102d\u1010\u103a\u1000\u103c\u102d\u102f\u1000\u103a\u1021\u101b\u1031\u102c\u1004\u103a\u1019\u103b\u102c\u1038\u1016\u103c\u1004\u1037\u103a \u1021\u1015\u1030\u1019\u103c\u1031\u1015\u102f\u1036\u1016\u1014\u103a\u1010\u102e\u1038\u1015\u102b\u104b<\/strong><\/span><\/h2>\n<p> <span style=\"color: #000000;\">\u1021\u1015\u1030\u1019\u103c\u1031\u1015\u102f\u1036\u101b\u103e\u102d \u1021\u1014\u102d\u1019\u1037\u103a\u104a \u1021\u101c\u1010\u103a\u1014\u103e\u1004\u1037\u103a \u1021\u1019\u103c\u1004\u1037\u103a\u1010\u1014\u103a\u1016\u102d\u102f\u1038\u1019\u103b\u102c\u1038\u1021\u1010\u103d\u1000\u103a \u1019\u100a\u103a\u101e\u100a\u1037\u103a\u1021\u101b\u1031\u102c\u1004\u103a\u1019\u103b\u102c\u1038\u1000\u102d\u102f \u1021\u101e\u102f\u1036\u1038\u1015\u103c\u102f\u101b\u1019\u100a\u103a\u1000\u102d\u102f \u101e\u1010\u103a\u1019\u103e\u1010\u103a\u101b\u1014\u103a <strong>colorRampPalette<\/strong> \u1021\u1004\u103c\u1004\u103a\u1038\u1021\u1001\u102f\u1036\u1000\u102d\u102f \u1021\u101e\u102f\u1036\u1038\u1015\u103c\u102f\u1014\u102d\u102f\u1004\u103a\u101e\u100a\u103a\u104b<\/span> <\/p>\n<pre style=\"background-color: #ececec; font-size: 15px;\"> <strong><span style=\"color: #008080;\"><span style=\"color: #000000;\"><span style=\"color: #008000;\">library<\/span> (heatmap)\n\n<span style=\"color: #008080;\">#create heatmap with custom colors<\/span>\npheatmap(data, color=colorRampPalette(c(\" <span style=\"color: #ff0000;\">blue<\/span> \", \" <span style=\"color: #ff0000;\">white<\/span> \", \" <span style=\"color: #ff0000;\">red<\/span> \"))(20))<\/span><\/span><\/strong> <\/pre>\n<p><img decoding=\"async\" loading=\"lazy\" class=\" wp-image-35124 aligncenter\" src=\"https:\/\/statorials.org\/wp-content\/uploads\/2023\/08\/phheat3.png\" alt=\"\" width=\"507\" height=\"508\" srcset=\"\" sizes=\"\"><\/p>\n<p> <span style=\"color: #000000;\">\u1021\u1014\u102d\u1019\u1037\u103a\u1010\u1014\u103a\u1016\u102d\u102f\u1038\u1019\u103b\u102c\u1038\u1000\u102d\u102f <strong>\u1021\u1015\u103c\u102c\u101b\u1031\u102c\u1004\u103a<\/strong> \u1016\u103c\u1004\u1037\u103a \u1015\u103c\u101e\u1011\u102c\u1038\u1015\u103c\u102e\u1038\u104a \u1021\u101c\u101a\u103a\u1021\u101c\u1010\u103a\u1010\u1014\u103a\u1016\u102d\u102f\u1038\u1019\u103b\u102c\u1038\u1000\u102d\u102f <strong>\u1021\u1016\u103c\u1030\u101b\u1031\u102c\u1004\u103a<\/strong> \u1016\u103c\u1004\u1037\u103a \u1015\u103c\u101e\u1011\u102c\u1038\u1015\u103c\u102e\u1038 \u1019\u103c\u1004\u1037\u103a\u1019\u102c\u1038\u101e\u1031\u102c\u1010\u1014\u103a\u1016\u102d\u102f\u1038\u1019\u103b\u102c\u1038\u1000\u102d\u102f <strong>\u1021\u1014\u102e\u101b\u1031\u102c\u1004\u103a<\/strong> \u1016\u103c\u1004\u1037\u103a \u1015\u103c\u101e\u1011\u102c\u1038\u101e\u100a\u103a\u104b<\/span><\/p>\n<p> <span style=\"color: #000000;\">\u101e\u1004\u1037\u103a\u1021\u1015\u1030\u1019\u103c\u1031\u1015\u102f\u1036\u1021\u1010\u103d\u1000\u103a \u101e\u1004\u1037\u103a\u1000\u102d\u102f\u101a\u103a\u1015\u102d\u102f\u1004\u103a\u1021\u101b\u1031\u102c\u1004\u103a\u1005\u1000\u1031\u1038\u1000\u102d\u102f \u1016\u1014\u103a\u1010\u102e\u1038\u101c\u102d\u102f\u101e\u100a\u1037\u103a\u1021\u101b\u1031\u102c\u1004\u103a\u1019\u103b\u102c\u1038\u1000\u102d\u102f \u101c\u103d\u1010\u103a\u101c\u1015\u103a\u1005\u103d\u102c\u101e\u1010\u103a\u1019\u103e\u1010\u103a\u1015\u102b\u104b<\/span><\/p>\n<h2> <span style=\"color: #000000;\"><strong>\u1011\u1015\u103a\u101c\u1031\u102c\u1004\u103a\u1038\u1021\u101b\u1004\u103a\u1038\u1021\u1019\u103c\u1005\u103a\u1019\u103b\u102c\u1038<\/strong><\/span><\/h2>\n<p> <span style=\"color: #000000;\">\u1021\u1031\u102c\u1000\u103a\u1016\u1031\u102c\u103a\u1015\u103c\u1015\u102b \u101e\u1004\u103a\u1001\u1014\u103a\u1038\u1005\u102c\u1019\u103b\u102c\u1038\u101e\u100a\u103a R \u1010\u103d\u1004\u103a \u1021\u1001\u103c\u102c\u1038\u1018\u102f\u1036\u1021\u101c\u102f\u1015\u103a\u1019\u103b\u102c\u1038\u1000\u102d\u102f \u1019\u100a\u103a\u101e\u102d\u102f\u1037\u101c\u102f\u1015\u103a\u1006\u1031\u102c\u1004\u103a\u101b\u1019\u100a\u103a\u1000\u102d\u102f \u101b\u103e\u1004\u103a\u1038\u1015\u103c\u101e\u100a\u103a-<\/span><\/p>\n<p> <a href=\"https:\/\/statorials.org\/my\/r-\u1010\u103d\u1004\u103a-\u1006\u1000\u103a\u1005\u1015\u103a\u1019\u103e\u102f-\u1021\u1015\u1030\u1019\u103c\u1031\u1015\u102f\u1036\/\" target=\"_blank\" rel=\"noopener\">R \u1010\u103d\u1004\u103a Correlation Heatmap \u1016\u1014\u103a\u1010\u102e\u1038\u1014\u100a\u103a\u1038<\/a><br \/> <a href=\"https:\/\/statorials.org\/my\/\u1021\u1015\u1030\u1019\u103c\u1031\u1015\u102f\u1036-r-ggplot2\/\" target=\"_blank\" rel=\"noopener\">ggplot2 \u1000\u102d\u102f \u1021\u101e\u102f\u1036\u1038\u1015\u103c\u102f\u104d R \u1010\u103d\u1004\u103a \u1021\u1015\u1030\u1019\u103c\u1031\u1015\u102f\u1036\u1016\u1014\u103a\u1010\u102e\u1038\u1014\u100a\u103a\u1038<\/a><br \/> <a href=\"https:\/\/statorials.org\/my\/r-\u1010\u103d\u1004\u103a-categorical-data-\u1019\u103b\u102c\u1038\u1000\u102d\u102f-\u1000\u103c\u1036\u1005\u100a\u103a\u1001\u103c\u1004\u103a\u1038\u104b\/\" target=\"_blank\" rel=\"noopener\">R \u1010\u103d\u1004\u103a categorical data \u1000\u102d\u102f \u1018\u101a\u103a\u101c\u102d\u102f\u1006\u103d\u1032\u1019\u101c\u1032\u104b<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u1005\u102d\u1010\u103a\u1000\u103c\u102d\u102f\u1000\u103a\u1021\u1015\u1030\u1019\u103c\u1031\u1015\u102f\u1036\u1019\u103b\u102c\u1038\u1016\u1014\u103a\u1010\u102e\u1038\u101b\u1014\u103a R \u101b\u103e\u102d phatmap \u1015\u1000\u103a\u1000\u1031\u1037\u1001\u103a\u103b\u104f phheatmap() \u101c\u102f\u1015\u103a\u1006\u1031\u102c\u1004\u103a\u1001\u103b\u1000\u103a\u1000\u102d\u102f \u101e\u1004\u103a\u1021\u101e\u102f\u1036\u1038\u1015\u103c\u102f\u1014\u102d\u102f\u1004\u103a\u1015\u102b\u101e\u100a\u103a\u104b \u1021\u1031\u102c\u1000\u103a\u1016\u1031\u102c\u103a\u1015\u103c\u1015\u102b \u1025\u1015\u1019\u102c\u1019\u103b\u102c\u1038\u101e\u100a\u103a \u1021\u1031\u102c\u1000\u103a\u1015\u102b\u1012\u1031\u1010\u102c\u1021\u1010\u103d\u1032\u1021\u1010\u102f\u1016\u103c\u1004\u1037\u103a \u1024\u101c\u102f\u1015\u103a\u1006\u1031\u102c\u1004\u103a\u1001\u103b\u1000\u103a\u1000\u102d\u102f \u101c\u1000\u103a\u1010\u103d\u1031\u1037\u1021\u101e\u102f\u1036\u1038\u1001\u103b\u1014\u100a\u103a\u1038\u1000\u102d\u102f \u1015\u103c\u101e\u101e\u100a\u103a- #make this example reproducible set. seeds (1) #create matrix with fake data values data = matrix(rnorm(100), 20, 5) data[1:10, seq(1, 5, 1)] = data[1:10, seq(1, 5, 1)] + 3 data [11:20, seq(2, 5, 1)] = data [11:20, seq(2, 5, 1)] + [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[3],"tags":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v21.5 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ 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